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Neville C. W. Smith M.D. Memorial Learning Resource Center: Nursing

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  • A DNA methylation-based clock for age estimates in the wood mouse (Apodemus sylvaticus)This link opens in a new windowApr 11, 2025
    Although short-lived, easily manipulated wild systems could be useful for studying ageing, developing epigenetic clocks for them is challenging because their chronological age is often unknown. Here, we present a multi-tissue epigenetic clock for the wood mouse (Apodemus sylvaticus) that was developed in a laboratory colony and then applied to wild individuals. We used the mammalian methylation array to profile CpG sites across highly conserved stretches of DNA in blood, ear, spleen, and liver of colony-reared mice. We trained an elastic net model with Leave-One-Out-Cross Validation (LOOCV), which identified 77 key age-related CpG sites as being highly predictive of chronological age (r = 0.99; MAE = 3.29 days). Upon validation in an independent dataset, the LOOCV clock predicted age with an MAE of 54.68 days. Epigenome-wide association study and Genomic Regions Enrichment of Annotations Tool analysis of age-related CpGs primarily revealed hypermethylation of promoter regions linked to development and transcription factor activity, particularly via changes in methylation of PRC2 targets sites. Critically, our epigenetic clock was able to predict broad age categories in wild mice and increased over chronological time in 75% of individuals. This and similar clock developments in other short-lived wild systems, that can be bred in captivity, will enhance our ability to conduct experimental manipulations of ageing in ecology and evolution.
  • SpatioCell: A Deep Learning Algorithm for High-resolution Single-cell Mapping through Deep Integration of Histology Image and Sequencing DataThis link opens in a new windowApr 11, 2025
    Spatial transcriptomics (ST) enables gene expression analysis within spatial context of tissues. Since most data are limited to multicellular resolution, current computational methods can only estimate cell proportions. To address this gap, we introduce SpatioCell, a framework that integrates imaging data-derived morphological features with transcriptomic measurements for precise single-cell annotation. SpatioCell combines automated adaptive prompting with an optimized vision model for accurate cell segmentation and morphological analysis. Dynamic programming then optimizes cell-type assignments by integrating H&E-derived morphology and transcriptomic constraints, improving resolution within and beyond ST spots. Extensive benchmarking on histopathological, simulated, and real ST data from five distinct cancer types shows that SpatioCell outperforms state-of-the-art methods in both nuclear segmentation and cell annotation accuracy. Notably, SpatioCell reveals tumor microenvironment details, such as tumor boundaries, blood vessel structures, and immune infiltration, that were missed by other methods, while also showing strong potential in correcting deconvolution errors to further increase annotation accuracy. By redefining single-cell spatial mapping with unprecedented accuracy and resolution, SpatioCell enables precise analysis of tissue heterogeneity, offering new insights into cancer and tissue biology.
  • Autosomal dominant PKD rates in Military Health System highest for women, black adultsThis link opens in a new windowApr 12, 2025

    BOSTON — Autosomal dominant polycystic kidney disease rates in the Military Health System are comparable to the general population, but with variability among certain groups, according to a speaker.
    “It is an interesting study because the military health system is a universal health care system, so it looks at a group of patients who do not have the barriers to care that the general population in the United States does,” Rachael Silverberg, MD, of the Walter Reed National Military Medical Center in Bethesda, Maryland, told Healio.
    Researchers used the Military Health System

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  • UC Davis Health uses AI models to leave no patient behindThis link opens in a new windowApr 10, 2025

    UC Davis Health uses AI models to leave no patient behind

    New algorithm can help identify patients in need of care management and advance health equity

    (SACRAMENTO)

    Artificial Intelligence is helping UC Davis Health predict which patients may need immediate care and eventually keep them from being hospitalized.

    The population health AI predictive model created by a multidisciplinary team of experts is called BE-FAIR (Bias-reduction and Equity Framework for Assessing, Implementing, and Redesigning). Its algorithm has been programmed to identify patients who may benefit from care management services to deal with health problems before they lead to emergency department visits or hospitalization.

    The team outlined their approach and creation of the BE-FAIR model in an article published in the Journal of General Internal Medicine. The paper states how BE-FAIR can advance health equity and explains how other health systems can develop their own custom AI predictive model for more effective patient care.

    “Population health programs rely on AI predictive models to determine which patients are most in need of scarce resources, yet many generic AI models can overlook groups within patient populations exacerbating health disparities among those communities,” explained Reshma Gupta, chief of population health and accountable care for UC Davis Health. “We set out to create a custom AI predictive model that could be evaluated, tracked, improved and implemented to pave the way for more inclusive and effective population health strategies.”

    Reshma Gupta
    “We set out to create a custom AI predictive model that could be evaluated, tracked, improved and implemented to pave the way for more inclusive and effective population health strategies.” Reshma Gupta

    Creating the BE-FAIR model

    To create the system-wide BE-FAIR model, UC Davis Health brought together a team of experts from the health system’s population health, information technology and equity teams.

    Over a two-year period, the team created a nine-step framework that provided care managers with predicted probabilities of potential future hospitalizations or emergency department visits for individual patients.

    Patients above a threshold percentile of risk were identified, and, with primary care clinician guidance, determined if they could benefit from program enrollment. If appropriate, staff proactively contacted patients, provided needs assessments and began pre-defined care management workflows.

    Responsible use of AI

    After a 12-month period, the team evaluated the model’s performance. They found the predictive model underpredicted the probability of hospitalizations and emergency department visits for African American and Hispanic groups. The team identified the ideal threshold percentile to reduce this underprediction by evaluating predictive model calibration.

    “As healthcare providers we are responsible for ensuring our practices are most effective and help as many patients as possible,” said Gupta. “By analyzing our model and making small adjustments to improve our data collection, we were able to implement more effective population health strategies.”

    Studies have shown that systematic evaluation of AI models by health systems is necessary to determine the value for the patient populations they serve. 

    Hendry Ton
    “The BE-FAIR framework ensures that equity is embedded at every stage to prevent predictive models from reinforcing health disparities.” Hendry Ton

    “AI models should not only help us to use our resources efficiently — they can also help us to be more just,” added Hendry Ton, associate vice chancellor for health equity, diversity, and inclusion. “The BE-FAIR framework ensures that equity is embedded at every stage to prevent predictive models from reinforcing health disparities.”

    Sharing the framework

    The use of AI systems has been adopted by health care organizations across the United States to optimize patient care.
    About 65% of hospitals use AI predictive models created by electronic health record software developers or third-party vendors, according to data from the 2023 American Hospital Association Annual Survey Information Technology Supplement.

    Jason Adams
    “It is well known that AI models perform as well as the data you put in it — if you are taking a model that was not built for your specific patient population, some people are going to be missed.” Jason Adams

    “It is well known that AI models perform as well as the data you put in it — if you are taking a model that was not built for your specific patient population, some people are going to be missed,” explained Jason Adams, director of data and analytics strategy. “Unfortunately, not all health systems have the personnel to create their own custom population health AI predictive model, so we created a framework healthcare leaders can use to walk through and develop their own.”

    The nine step framework of the BE-FAIR model is outlined here.

  • Mobile mammography clinic increases access to lifesaving breast cancer screeningThis link opens in a new windowMar 31, 2025

    Mobile mammography clinic increases access to lifesaving breast cancer screening

    ‘MobileMammo+’ helps UC Davis Health fulfill its ‘Believe in Better’ mission

    (SACRAMENTO)

    A ribbon cutting was held today for UC Davis Comprehensive Cancer Center’s first-ever mobile mammography clinic. The MobileMammo+ bus will serve marginalized and hard-to-reach rural communities to increase access to breast cancer screening.

    “When people can’t come to us — we will go to them,” said cancer center Director Primo “Lucky” Lara Jr. “The tragic news is that while breast cancer rates are lower in rural areas, deaths from breast cancer are much higher. This is due to lower screening rates.”

    Man with dark hair at podium with pink shirt that reads "MobileMammo+" and others in the audience with pink shirts that read "Early Detection Saves Lives."
    UC Davis Comprehensive Cancer Center Director Primo "Lucky" Lara Jr. speaks at the ribbon cutting ceremony for MobileMammo+.

    The MobileMammo+ bus will be parked at the UC Davis Health Elk Grove Clinic for several days a week and then travel to Federally Qualified Health Centers to serve communities throughout the region the rest of the week. In the future, MobileMammo+ may visit non-clinical locations such as churches and social service agencies.

    Research lab on wheels

    Services on the 45-foot-long clinic-on-wheels include mammograms, multilingual care and health education. The mobile clinic also serves as a data collection hub for health equity research led by Diana Miglioretti, breast cancer researcher and UC Davis biostatistics division chief. She also co-leads the cancer center’s Population Sciences and Health Disparities program.

    “More than 30% of people are inadequately screened for breast cancer and rates are even lower among marginalized communities,” Miglioretti said. “The mobile mammography service helps us gather crucial data for health equity research, which will help us tailor our cancer prevention programs and deepen our understanding of breast cancer in diverse populations.”

    Over a five-year period, data collected on MobileMammo+ will help build a repository of long-term data on breast cancer screening, diagnosis and treatment.

    “The idea is to develop effective, individualized care by leveraging leading-edge genomics and AI (artificial intelligence) to predict breast cancer risk in underserved women,” Miglioretti said.

    Three adults stand in front of a large mobile mammogram unit to cut a large pink ribbon.
    The ribbon cutting ceremony for MobileMammo+ was held on March 31. UC Davis Comprehensive Cancer Center Director Primo "Lucky" Lara Jr (left), UC Davis Biostatistics Chief Diana Miglioretti (center) and Chief of Breast Radiology Shadi Shakeri (right) participated.

    Increasing access to breast cancer screening

    Patients in many rural and urban communities struggle to access preventive health care due to barriers including transportation, insurance, language differences and distance to a provider or clinic.

    The project will draw on expertise from Shadi Aminololama-Shakeri, chief of breast radiology at UC Davis Health. Also involved is Laura Fejerman, a leading researcher of breast cancer in Latinas and co-director of the cancer center’s Women’s Cancer Care and Research Program. Fejerman is associate director for the cancer center’s Office of Community Outreach and Engagement and co-director of the Latinos United for Cancer Health Advancement initiative.

    “We want to build and implement a multi-faceted program to improve cancer screening and diagnosis that incorporates traditional and innovative approaches that will lead to more effective and personalized strategies for underserved communities,” Fejerman said.

    Mammography technology inside the bus with a mural of Lake Tahoe in background.
    State-of-the-art 3D mammography technology is onboard the MobileMammo+ bus.

    Bringing mammogram screening to communities

    Staffed with a certified breast imaging technologist, MobileMammo+ will perform services that mirror the radiology expertise at UC Davis Health clinics. “This will allow us to offer state-of-the-art 3D mammography to under-resourced and remote communities,” Aminololama-Shakeri said.

    Offered on board will be breast cancer screening education, outreach and navigation services to increase screening participation and patient navigation to ensure that follow-up diagnostic imaging and breast cancer treatment are received, if indicated.

    “We hope to screen nearly 5,000 women a year,” said Alyssa Reed, senior program manager for MobileMammo+.

    Reed, a breast cancer survivor, stresses the importance of early detection. Mammograms can correctly identify about 87% of breast cancers in women.

    “We know that the earlier breast cancer is caught, the greater the chances of successfully treating that cancer,” Reed said.

    Screening for other cancers in the future

    Cervical cancer screenings also may soon be available on MobileMammo+ through human papillomavirus (HPV) self-testing.

    “The cancer center is seeking additional funding to conduct a study on the mobile mammography bus that uses HPV testing kits to increase cervical cancer screening rates,” said Julie Dang. She is executive director of the cancer center’s Office of Community Outreach and Engagement and conducts studies focused on HPV-related cancers.

    HPV vaccinations and colorectal cancer FIT tests may also be brought on board as MobileMammo+ expands in future years.

    A man in a brown suit with a bowtie.
    When people can’t come to us — we will go to them.” UC Davis Comprehensive Cancer Center Director Primo “Lucky” Lara Jr.

    Funding for MobileMammo+

    Initial funding for MobileMammo+ came from a settlement award that arose from a class-action lawsuit against Wyeth Pharmaceuticals. The lawsuit alleged that Wyeth misrepresented the benefits and risks of its hormone replacement therapy medication for women.

    When money remains after eligible class members receive their claim payments, courts can distribute those residual funds to charitable causes. The proposed mobile mammography service was one of the recipients of those surplus Wyeth settlement funds.

    Funding is key for multiplying the impact of MobileMammo+

    Expansion of the mobile mammography service depends upon philanthropic support as well as grants.

    “There is so much more we would like to do to increase access to cancer screenings and save lives,” said Miglioretti. The mobile service, she added, may be able to perform other types of cancer screenings down the road.

    UC Davis Comprehensive Cancer Center

    UC Davis Comprehensive Cancer Center is the only National Cancer Institute-designated center serving the Central Valley and inland Northern California, a region of more than 6 million people. Its specialists provide compassionate, comprehensive care for more than 100,000 adults and children every year and access to more than 200 active clinical trials at any given time. Its innovative research program engages more than 240 scientists at UC Davis who work collaboratively to advance discovery of new tools to diagnose and treat cancer. Patients have access to leading-edge care, including immunotherapy and other targeted treatments. Its Office of Community Outreach and Engagement addresses disparities in cancer outcomes across diverse populations, and the cancer center provides comprehensive education and workforce development programs for the next generation of clinicians and scientists. For more information, visit cancer.ucdavis.edu.

Lab Tests

Medical Spanish

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Nursing Encyclopedias

Pharmacology and Drug eReference

Drugs, Herbs and Substances: Based on data from the Society of Health System Pharmacists.

National Library of Medicine (NLM) - Rx Information: Prescription drug information.

Quantitative Data on Health Disparities and Pathologies

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Nursing Flash Cards from Studystack.com

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